基于SSR分子标记构建南方型美洲黑杨初级核心种质
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“十三五”国家重点研发计划(2016YFD0600402);


Construction of Core Collection in Southern Type of Populus deltoides Using SSR Markers
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    摘要:

    以所收集的363份美洲黑杨无性系为实验材料,利用20对SSR引物扩增数据,设置10%、15%、 20%、25%、30%、35%、40% 共7个取样梯度构建南方型美洲黑杨初级核心种质,并采用平均观察等位基因数(Na)等遗传参数的t检验对核心种质有效性进行确认,以初级核心种质、保留种质以及原始种质三者之间平均观察等位基因数(Na)等遗传参数的保留比例作为评价指标,结合主坐标轴分析法对初级核心种质做进一步代表性确认。结果显示:(1)20对SSR引物共检测到278个多态位点,遗传多样性参数IH分别为1.667和0.688 2,表明南方型美洲黑杨种质资源具有丰富的遗传变异。(2)比较平均Na、IH变化确定15%为最佳取样比例,得到54份核心种质和309份保留种质,构建的初级核心种质与原始种质的平均Na、IHt检验不显着,除平均Na外其他平均遗传多样性参数,如Ne、Ho、IH的保留率分别为111%、105%、104%和104%。(3)PCoA分析显示,所构建的初级核心种质不仅与原始种质分布相似,而且分散均匀覆盖较全面,可以代表原始种质在图中的几何分布。研究认为,所构建的45份初级核心种质保存了原始种质大部分的等位基因和基因型,剔除了原始种质的遗传冗余度和遗传重复度,具有更高的遗传多样性参数保留率,能全面代表原始种质的遗传多样性。

    Abstract:

    363 clones of Populus deltoides were used as test materials. Based on 20 pairs of SSR molecular marker amplification data, 10%, 15%, 20%, 25%, 30%, 35% and 40% sampling ratios were set to construct the primary core collection of P. deltoides. The validity of the core collection was supported by ttest using genetic parameters such as the average number of observed alleles (Na). Retention ratio of genetic diversity such as average observed allele number (Na) between core collection, reserve collection and original collection, and the core collection was further confirmed by the PCoA analysis. The results were described as follows: (1) A total of 278 polymorphic loci was detected by 20 pairs of SSR primers. The genetic diversity parameters I and H were 1.667 and 0.688 2, respectively, indicating that the southern type of P. deltoides germplasm resources were rich in genetic variation. (2) Comparing the average Na, I and H changes to determine the optimal sampling ratio of 15%, obtaining 54 core collections and 309 reserve collection, ttest analysis suggested that there was not a significant correlation between average Na, I and H of primary core collection and the original collection (P> 0.05), except for the average Na, the retaining ratios of Ne, Ho, I and H was 111%, 105%, 104% and 104%, respectively. (3)Principal coordinate analysis (PCoA) showed that the primary core collection was not only similar to the original germplasm distribution, but also distributed uniformly and comprehensively, which could represent the geometric distribution of the original germplasm in the figure. These results demonstrated that the 45 accessions as primary core collection could preserved most of the alleles and genotypes of the original germplasm, Some genetic diversity indexes increase while the genetic redundancy and genetic repetition was removed,which mean that the primary core collection could stand for original collection excellently.

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彭 婵, 樊孝萍,苏晓华,等.基于SSR分子标记构建南方型美洲黑杨初级核心种质[J].西北植物学报,2019,39(2):250-257

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  • 在线发布日期: 2019-03-22
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