甘薯4香豆酸辅酶A连接酶基因的生物信息学鉴定和表达分析
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海南省科研院所技术开发专项(KYYS201803)


Bioinformatic Identification and Expression Analysis of 4CL Genes in Ipomoea batatas
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    摘要:

    4香豆酸辅酶A连接酶(4coumarate:CoA ligase, 4CL) 在苯丙烷类代谢途径中具有重要调控作用。该研究利用转录组数据在甘薯品种QS48中鉴定了11个4CL基因,并将这些基因命名为Ib4CL1~Ib4CL11。序列比对和功能域分析发现, 11个Ib4CL蛋白均具有典型的4CL结构特征,包含保守的Box Ⅰ和Box Ⅱ的结构域。进化和保守基序分析显示,Ib4CL1和Ib4CL2属于Ⅰ类4CL,Ib4CL3属于Ⅱ类4CL,而Ib4CL4~Ib4CL11属于4CL类似蛋白。转录组数据和荧光定量PCR分析显示,Ib4CL3和Ib4CL10在甘薯QS48的叶中转录表达水平显著高于茎和块根,与绿原酸的积累呈正相关关系;Ib4CL4和Ib4CL8在嫩叶中表达较高,与花青素的积累密切相关。研究结果为进一步揭示甘薯4CL基因在苯丙烷类代谢途径中的功能奠定了基础。

    Abstract:

    4coumarate: CoA ligase (4CL) plays an important regulatory role in the phenylaprapanoid metabolism. In this study, 11 4CL genes named Ib4CL1-Ib4CL11 were identified in sweet potato (Ipomoea batatas) based on transcriptome data. The results of sequence alignment and functional domain analysis showed that all Ib4CL had typical 4CL structural feature, containing the conserved Box Ⅰ and Box Ⅱ domains. Evolutionary and conserved motif analysis suggested that Ib4CL1 and Ib4CL2 belong to Class Ⅰ, Ib4CL3 belongs to Class Ⅱ, and Ib4CL4Ib4CL11 belong to 4CLlike proteins. Transcriptome data and quantitative realtime PCR analysis showed that the transcriptional levels of Ib4CL3 and Ib4CL10 in leaves were significantly higher than that in stems and roots, which were positively related to the accumulation of chlorogenic acid; Ib4CL4 and Ib4CL8 were higher expressed in young leaves, closely related to the accumulation of anthocyanins. The results laid the foundation for further revealing possible function of 4CL genes in phenylaprapanoid metabolism of sweet potato.

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徐 靖,林延慧,王效宁,等.甘薯4香豆酸辅酶A连接酶基因的生物信息学鉴定和表达分析[J].西北植物学报,2020,40(4):581-587

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  • 在线发布日期: 2020-06-22
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