茶菊品种‘14C1’的CmF3H基因及启动子克隆与表达分析
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北京市农林科学院创新能力建设专项(KJCX20200106,KJCX20200112)


Cloning and Expression Analysis of CmF3H from Chrysanthemum morifolium ‘14C1’ and Isolation of Its Promoter
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    摘要:

    该研究以自育茶菊品种‘14C1’为材料,克隆了一个黄烷酮3羟化酶(F3H)基因,命名为CmF3H。生物信息学分析表明,‘14C1’CmF3H的cDNA序列(GenBank登录号MW454869)全长为1 284 bp,开放阅读框为1 095 bp,编码364个氨基酸,编码蛋白的理论分子量为41.19kD,等电点为5.57,不稳定系数为39.51,平均亲水性-0.465,脂肪系数为83.02。氨基酸序列分析表明,‘14C1’CmF3H蛋白属于2酮戊二酸依赖双加氧酶(2ODD)蛋白家族,具有2酮戊二酸双加氧酶结构域。系统发育分析结果显示,‘14C1’与菊花栽培种‘SU07’处于同一进化节点上,二者亲缘关系最近。采用染色体步移方法克隆了‘14C1’CmF3H启动子序列(GenBank登录号MW463894),全长1 217 bp,启动序列分析发现其含有光响应元件、干旱和ABA响应元件、MYB识别和结合位点和组织器官发育元件等。实时荧光定量PCR分析表明,CmF3H在‘14C1’的根、茎、叶、花蕾、舌状花和筒状花等不同组织部位均有表达,在筒状花中表达量最高,其次为茎、叶、花蕾、舌状花,根中表达量最低。该研究结果为进一步揭示菊花黄酮类化合物的生物合成机制奠定了基础。

    Abstract:

    In this study, a flavanone 3hydroxylase (F3H) gene named CmF3H was cloned from Chrysanthemum morifolium ‘14C1’. Bioinformatics analysis showed that the full length of ‘14C1’ CmF3H cDNA (GenBank: MW454869) is 1 284 bp, and the open reading frame length is 1 095 bp, encoding 364 amino acids. The theoretical molecular weight of ‘14C1’ CmF3H coding protein is 41.19 kD, theoretical pI is 5.57, the instability index is 39.51, the grand average hydropathicity is -0.465, the aliphatic index is 83.02. Amino acid alignment results indicated that ‘14C1’ CmF3H protein belongs to 2oxoglutaratedependent dioxygenase (2ODD) protein family, and has the typical characteristics of 2ODD conservative structure domain. Phylogenetic tree analysis showed that ‘14C1’ and C. morifolium ‘SU07’ were located on the same evolutionary node, which indicated that they had the closest relationship. The promoter of ‘14C1’ CmF3H was cloned by Genome Walking Method (GenBank: MW463894), its full length is 1 217 bp. The promoter sequence included light responsive element, drought and ABA responsive elements, MYB recognition and binding site as well as light responsive and organization specific expression elements. The analysis of realtime quantitative PCR indicated that CmF3H gene was expressed among different tissues of ‘14C1’ such as root, stem, leaf, bud, ligulate flower and tubular flower, the expression levels of CmF3H were the highest in tubular flower, followed by stem, leaf, bud, ligulate flower, and lowest in root. The results of this study can provide reference for the study on the biosynthesis mechanism of flavonoids in C. morifolium.

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曹世哲,罗 昌,陈东亮,等.茶菊品种‘14C1’的CmF3H基因及启动子克隆与表达分析[J].西北植物学报,2021,41(1):78-85

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  • 在线发布日期: 2021-02-26
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