黄瓜MTP基因家族分析及重金属胁迫下表达特征分析
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1.长江大学 园艺园林学院;2.长江大学 农学院

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湖北省教育厅科学技术研究项目


Analysis of MTP gene family and expression characteristics under heavy metal stress in cucumber
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Scientific Research Program of Hubei Provincial Department of Education

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    摘要:

    金属耐受蛋白(MTP)是阳离子转运蛋白家族(CDF)的主要成员,在植物重金属转运及胁迫响应中起着关键作用。为系统鉴定和分析黄瓜MTP基因家族(CsMTP)成员,本研究以模式物种MTP序列作为种子序列,BLASTp比对黄瓜氨基酸序列数据库,成功鉴定到10个CsMTP候选,并对其进行了系统发育、保守结构域、基因结构、染色体定位等分析。结果表明:10个CsMTP可分为Fe/Zn-CDF(2个)、Mn-CDF(3个)和Zn-CDF(5个)三个亚家族,根据系统发育关系分别命名为CsMTP3至CsMTP12。大部分CsMTP成员含有6个跨膜结构域;Mn-MTP亚家族成员CsMTP8、CsMTP11、CsMTP9含有保守基序DxxxD,Zn-MTP和Fe/Zn-MTPs亚家族成员CsMTP3、4、5和CsMTP7含有保守基序HxxxD。RNA-seq数据分析表明,CsMTP具备组织特异性表达和响应不同处理的特征,CsMTP11、CsMTP3和CsMTP7在不同组织和处理下普遍高水平表达。qRT-PCR分析表明,不同重金属处理后,CsMTPs可被不同金属诱导差异表达,包括不是MTP家族潜在底物的重金属。

    Abstract:

    Metal tolerance protein (MTP) is an important member of cation transporter family (CDF), which plays a key role in heavy metal transport and detoxification. In order to systematically identify and analyze the cucumber MTP gene family (CsMTP), this study used the MTP sequence of model species as seed sequence to BLASTP the amino acid sequence database of cucumber, and successfully identified 10 CsMTP candidates. Then phylogenetic tree, conservative domain, gene structure, chromosome location and other biological analysis were carried out. The results show that 10 CsMTPs can be divided into Fe / Zn-CDF (2) Mn-CDF (3) and Zn-CDF subfamily (5), which were further named as CsMTP3 to CsMTP12 based on phylogenetic relationship. Most CsMTPs contain 6 transmembrane domains (TMD). CsMTP8, CsMTP9 and CsMTP11, which belong to Mn-MTP subgroup, contain the same sequence DxxxD, HxxxD motifs were observed in CsMTP3, 4, 5 and CsMTP7 of Zn-MTP and Fe / Zn MTPs subgroups. CsMTPs showed tissue and treatment-specific expression patterns. RNA-seq analysis revealed that CsMTP11, CsMTP3 and CsMTP7 maintained relatively higher expression level. qRT-PCR study demonstrated that CsMTPs could be induced by the treatment of different metals, including metals that are not the potential substrate of MTP family.

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历史
  • 收稿日期:2021-02-02
  • 最后修改日期:2021-04-20
  • 录用日期:2021-04-20
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