菜心SOD基因的克隆及其在低温条件下的表达分析
CSTR:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

福州市重大专项(2016Z0001);


Cloning and Expression Analysis of SOD Genes of Brassica campestris L. ssp. chinensis(L.) var. utilis Tsen et Lee under Low Temperature
Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    采用同源克隆法从菜心中获得3个SOD基因,并进行生物信息学分析,采用qRTPCR分析3个基因在不同组织器官和低温胁迫下的表达模式。结果表明:(1)获得Cu/ZnSODFeSODMnSOD基因的ORF,分别命名为BclCZSDBclFSDBclMSD,序列长分别为459、639、696 bp,分别编码152、212、231个氨基酸。(2) 生物信息学分析显示,3种蛋白均为稳定的亲水性蛋白,均不存在跨膜结构和信号肽,BclCZSD的二级结构以无规则卷曲为主,含有2个Cu/ZnSOD结构域, BclFSD和BclMSD的二级结构以α螺旋为主,含有一个相同的Mn/Fe SOD结构域;进化分析显示BclCZSD和BclMSD 与油菜最先聚在一个分支,BclFSD与甘蓝、萝卜、油菜、芜菁聚在一个分支。(3) qRTPCR结果显示,BclCZSDBclFSDBclMSD基因在菜心根、茎、叶和叶柄中均有表达,且在根、茎、叶和叶柄中的表达模式不完全相同;低温条件下,3个基因的表达量随着胁迫时间的延长均呈先升高后降低的变化趋势。研究结果为进一步探讨菜心SOD基因在低温胁迫下的响应机制奠定了基础。

    Abstract:

    In this study, three SOD genes were cloned from Brassica campestris L. ssp. chinensis(L.) var. utilis Tsen et Lee by homologous cloning and bioinformatics were analyzed. The expression patterns of three SOD genes in different tissues and under low temperature stress were analyzed by qRTPCR. The results showed that: (1) the ORF of Cu/ZnSOD, FeSOD and MnSOD genes were obtained and named BclCZSD, BclFSD and BclMSD. Their sequence length were 459, 639 and 696 bp, encoding 152, 212 and 231 amino acids, respectively. (2) Bioinformatics analysis showed that all three proteins were stable hydrophilic proteins without transmembrane structure and signal peptide. The secondary structure of BclCZSD protein was mainly random coil and had two Cu/ZnSOD domains, BclFSD and BclMSD proteins were mainly alpha helix and had one Mn/FeSOD domain. Evolutionary analysis showed that BclCZSD and BclMSD proteins were first clustered in one branch with SOD protein in Brassica napus, and BclFSD protein was clustered in one branch with Brassica oleracea, Raphanus sativus, Brassica napus and Brassica rapa. (3) The results of qRTPCR showed that BclCZSD, BclFSD and BclMSD genes were expressed with different expression profile in the roots, stems, leaves and petioles. The expression level of the 3 genes increased first and then decreased with the extension of time under low temperature. These results provide a foundation for the low temperature response mechanism study of SOD genes in Brassica campestris L. ssp. chinensis(L.) var. utilis Tsen et Lee.

    参考文献
    相似文献
    引证文献
引用本文

曾小玲,赵瑞丽,钟开勤,等.菜心SOD基因的克隆及其在低温条件下的表达分析[J].西北植物学报,2019,39(2):218-225

复制
分享
相关视频

文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2019-03-22
  • 出版日期:
文章二维码