甘薯草甘膦抗性基因EPSPS克隆和序列分析
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NSFC广东联合基金(U1701234)


Cloning and Expression Analysis of Glyphosate Resistance Gene EPSPS in Sweet Potato
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    摘要:

    EPSPS基因编码5烯醇式丙酮酰莽草酸3磷酸合成酶,该酶是芳香族氨基酸合成的关键酶,该基因在细菌、真菌、藻类和植物中被广泛克隆和研究。EPSPS酶是草甘膦除草剂的靶点酶,过量表达EPSPS基因可以提高作物的草甘膦抗性。该研究根据甘薯基因组数据库设计引物,以‘广薯87’为材料提取RNA,通过RTPCR方法扩增甘薯IbEPSPS基因,测序后进行生物信息学分析和表达分析。结果表明:(1)成功克隆获得甘薯IbEPSPS基因,该基因全长CDS为1 569 bp,编码522个氨基酸,其中在第98~113、173~183位氨基酸序列具有2个EPSPS的保守结构域。(2)系统进化树分析结果表明,甘薯IbEPSPS基因与三裂叶薯(Ipomoea triloba)、打碗花(Calystegia hederacea)、田旋花(Convolvulus arvensis)和牵牛(Ipomoea nil)聚在一类,其中与三裂叶薯的亲缘关系最近。(3)实时荧光定量PCR分析结果表明,甘薯IbEPSPS基因在茎、叶和茎尖表达量较高,同时受到草甘膦胁迫后IbEPSPS基因表达量提高。该研究结果为进一步探讨甘薯IbEPSPS基因的功能及甘薯对草甘膦的耐药性机制奠定了基础。

    Abstract:

    The EPSPS gene which encodes 5enolpyruvylshikimate3phosphate synthase, the key enzyme of aromatic amino acid synthesis has been cloned and widely studied in bacteria, fungi, algae, and plants. EPSPS is the target enzyme of glyphosate herbicide and its overexpression can improve glyphosate resistance of crops. In this study, primers were designed according to the genomic database of sweet potato, RNA was extracted from the sweet potato variety, ‘Guangshu 87’, and the gene amplified by RTPCR. After sequencing, bioinformatic analysis and expression analysis were carried out. The results showed that: (1) the total CDs of the IbEPSPS gene was 1 569 bp, encoding 522 amino acids, among these, there were two conserved domains of IbEPSPS gene in amino acid sequence 98-113 and 173-183 positions. (2) Phylogenetic tree analysis showed that the EPSPS of sweet potato was closely related to Ipomoea triloba, Calystegia hederacea, Convolvulus arvensis, and Ipomoea nil. (3) The results of realtime quantitative PCR showed that the IbEPSPS gene was highly expressed in the stem, leaf and shoot tip of sweet potato, and the expression of the IbEPSPS gene increased after the stress of glyphosate. The results provide a reference for further study on the function of the IbEPSPS gene and the mechanism of resistance of sweet potato to glyphosate.

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陈颖芳,周安琪,朱宏波.甘薯草甘膦抗性基因EPSPS克隆和序列分析[J].西北植物学报,2020,40(1):35-42

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  • 在线发布日期: 2020-04-02
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