青稞HvnRPS2基因克隆及其在条纹病胁迫下的表达分析
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国家自然科学基金(31660388,31960427);


Isolation and Expression Analysis of HvnRPS2 in Hulless Barley under Leaf Stripe Stress
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    摘要:

    为探索NBSLRR类基因RPS2在青稞抗条纹病过程中的作用,该研究以抗条纹病青稞品种‘昆仑14号’和感病品种‘Z1141’为材料,参照转录组序列设计引物,克隆得到一个差异表达的青稞HvnRPS2基因,进行相应的生物信息学分析,并采用实时荧光定量PCR(qRTPCR)法分析HvnRPS2基因在条纹病侵染下不同抗性青稞品种的表达模式。结果表明:(1)HvnRPS2基因全长3 089 bp,无内含子,包含1个2 760 bp的开放阅读框,编码919个氨基酸,理论等电点为5.93,预测蛋白分子量为104.2 kD,其编码的蛋白为亲水性蛋白,二级结构主要由无规则卷曲和ɑ螺旋组成。(2)蛋白质多序列比对及进化树分析表明,HvnRPS2含有高度保守的NBARC和LRR结构域,属于NBARC蛋白家族成员,与大麦HvRPS2和水稻OsRPS2亲缘关系最近。(3)qRTPCR分析显示,随着条纹病感病时间的延长,青稞HvnRPS2基因表达量呈先降低后升高再降低的模式;与正常叶片相比,感病叶片的HvnRPS2基因表达量显著下调,且感病品种表达量下调值显著低于抗病品种(P<0.01)。研究认为,HvnRPS2在青稞抗条纹病过程中发挥重要的负调控作用。研究结果为进一步探究该基因在青稞抗条纹病中的调控机理奠定基础。

    Abstract:

    In order to explore the role of NBSLRRlike gene RPS2 in the process of resistance to leaf stripe disease in hulless barley, we took leaf stripe disease resistant variety Kunlun 14 and susceptible variety Z1141 as materials in study. HvnRPS2 gene sequence by designing primer cloning according to transcriptome sequence (RNAseq), and carried out a series of bioinformatics analysis, we used qRTPCR to analyze the expression pattern of HvnRPS2 gene in different resistant hulless barley varieties. The result showed: (1) its fulllength sequence of 3 089 bp, without introns, contained a 2 760 bp open reading frame, encoded 919 amino acids, had a theoretical isoelectric point of 5.93, and had a predicted protein molecular weight of 104.2 kDa. The protein encoded by HvnRPS2 is hydrophilic and its secondary structure is mainly composed of irregular curl and αhelix. (2) The protein multiple sequence alignment and phylogenetic tree analysis showed, HvnRPS2 has highly conserved NBARC and LRR domains, and belonged to the NBSLRR gene family. and the closest relationship with HvRPS2 in Hordeum vulgare and OsRPS2 in Oryza. (3) qRTPCR results showed that HvnRPS2 gene decreased first, then increased and finally decreased with the prolongation of leaf stripe stress. Compared with normal leaves, the expression level of HvnRPS2 gene in susceptible leaves was significantly downregulated, and the downregulation value of susceptible varieties was significantly higher than that of disease resistant varieties (P < 0.01). The research speculates that HvnRPS2 plays an important negative role in the resistance of hulless barley to leaf stripe disease. The results of the study lay the foundation for further exploring the regulation mechanism of this gene in the resistance of barley to leaf stripe disease.

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魏 婵,姚晓华,姚有华,等.青稞HvnRPS2基因克隆及其在条纹病胁迫下的表达分析[J].西北植物学报,2021,41(12):2021-2029

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  • 在线发布日期: 2021-12-31
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