马铃薯HXK基因家族鉴定及表达特征分析
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甘肃农业大学园艺学院

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国际马铃薯中心-甘肃农业大学联合研发中心项目(701-03619028);甘肃省科技计划项目(20JR10RA529);甘肃省现代丝路寒旱农业发展项目(701-03422008);


Identification and Expression Characterization of HXK Gene Family in Potato (Solanum tuberosum)
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    摘要:

    为探究马铃薯HXK家族的功能,本研究利用生物信息学方法,对马铃薯HXK基因家族成员进行鉴定,并采用实时荧光定量PCR对该基因在不同模拟逆境胁迫下的表达进行分析。研究利用同源比对方法从马铃薯基因组中鉴定获得到6个马铃薯HXK基因,分别命名为StHXK1-StHXK6。该家族基因分别分布于马铃薯的6条染色体上,其编码蛋白长度为497~533 aa,等电点为5.36~6.11,分子质量在53 736.38~58 184.71 Da,均为亲水蛋白。亚细胞定位预测表明,StHXK家族成员主要在叶绿体中表达。该家族成员二级结构均以α-螺旋和不规则卷曲为主,三级结构高度相似。顺势元件分析发现马铃薯HXK基因主要包含光响应元件、激素响应元件、胁迫响应元件及生长发育相关元件。qRT- PCR结果表明,StHXK基因在ABA诱导下均上调表达显著,50 μmol/L ABA胁迫下,StHXK1和StHXK2在处理24 h相对表达量较高,分别为对照的286.4倍和152.02倍,200 mmol/L NaCl处理下,除StHXK1和StHXK4基因相对表达量在处理时间2 h呈上调表达,其余StHXK基因均呈不同程度的下调表达。在10% PEG胁迫处理下,StHXK基因相对表达量呈不同程度的上调表达。综上所述,StHXK基因对ABA、NaCl和PEG胁迫处理均存在不同程度的响应。

    Abstract:

    In order to investigate the function of the potato HXK family, this study used bioinformatics to identify the members of the potato HXK gene family and real-time fluorescence quantitative PCR to analyze the expression of this gene under different simulated stresses of adversity. This study identified the potato HXK genes, named StHXK1-StHXK6, from the potato genome using the homology matching method. The family genes were distributed on six chromosomes of potato, and their encoded proteins ranged from 497 to 533 aa in length, with an isoelectric point of 5.36-6.11 and molecular masses ranging from 53 736.38 to 58 184.71 Da, all of which are hydrophilic proteins. Subcellular localization predictions indicate that members of the StHXK family are predominantly expressed in chloroplasts. The secondary structures of all members of this family are dominated by α-helices and irregular coiling, and the tertiary structures are highly similar. The promoter region of the StHXK family contains light-responsive elements, hormone-responsive elements, stress-responsive elements and growth and development-related elements. The qRT-PCR results showed that all StHXK genes were significantly up-regulated under ABA induction, and the relative expression of StHXK1 and StHXK2 was higher under 50 μmol/L ABA stress at 24 h of treatment, 286.4 and 152.02 times higher than that of the control, respectively. Under 200 mmol/L NaCl treatment, the relative expression of all StHXK genes was down-regulated except for StHXK1 and StHXK4 genes which were up-regulated at 2 h of treatment time. The relative expression of StHXK gene was differentially up-regulated under 10% PEG stress treatment. In summary, the StHXK gene responded to ABA, NaCl and PEG stress treatments to varying degrees.

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王言,何雷,刘涛涛,等.马铃薯HXK基因家族鉴定及表达特征分析[J].西北植物学报,2023,43(12):2018-2029

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  • 收稿日期:2023-04-27
  • 最后修改日期:2023-06-06
  • 录用日期:2023-07-11
  • 在线发布日期: 2023-12-12
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