荷花 PIN 基因家族的鉴定及非生物胁迫表达分析
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西南林业大学园林园艺学院

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国家自然科学基金地区科学基金项目(32360070);云南省科技厅重大科技专项计划(202202AE090028);云南省高层次人才引进计划高端外国专家专项(YNQR-GDWG-2020-001);云南省农业基础联合面上项目(202101BD070001-124);云南省教育厅科学研究基金项目(2023Y0748)


Genome-wide identification and expression pattern of the PIN gene family under various abiotic stresses in Lotus (Nelumbo nucifera G.)
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    摘要:

    为探究荷花中NnPIN家族成员的特征及在非生物胁迫响应中的作用,该研究采用生物信息学方法对荷花NnPIN家族进行全基因组的鉴定,并采用qRT-PCR技术分析了其在低温(4 ℃)、水淹及外源施加 3 mmol/L 脱落酸(ABA)处理下的表达模式。结果显示,(1) 在荷花基因组中共鉴定出12个具跨膜结构域的NnPIN基因,分别命名为NnPIN1~12,且分布在6条染色体上,并主要定位于质膜和内质网。(2) 系统进化分析表明,NnPINs基因可根据中央亲水环的长度分为经典型和非经典型2种类型,且同一类型具相似结构;经典型具完整的motif 1~12, 而非经典型则缺失中央亲水环部分(motif 6, 8, 9, 12)。(3) 顺式作用元件分析发现,NnPINs基因在启动子区域具有大量光响应、非生物胁迫和激素响应元件,并特异性的具有厌氧、脱落酸(ABA)、低温等响应元件。(4) NnPINs基因的表达模式表明,NnPIN家族基因(除NnPIN8外)均正向响应外源 ABA 和低温胁迫,而NnPIN 6和NnPIN 7正向响应水淹胁迫,NnPIN 1、NnPIN 2、NnPIN 3、NnPIN 4、NnPIN 5、NnPIN 8、NnPIN 9和NnPIN 12则负向响应水淹胁迫。研究推测,NnPIN家族基因特异性参与荷花非生物逆境胁迫。

    Abstract:

    In order to explore the characteristics of NnPIN family members in lotus (Nelumbo nucifera G.) and their role in abiotic stress response, this study used bioinformatics methods to identify the whole genome of lotus NnPIN family, and used qRT-PCR technology to analyze its response to low temperature ( 4℃), water flooding and exogenous application of 3 mmol/L abscisic acid (ABA). The results showed that, (1) A total of 12 NnPIN genes with transmembrane domains were identified in the lotus genome, named NnPIN1~12 respectively, and were distributed on 6 chromosomes, and mainly located in the plasma membrane and endoplasmic reticulum. (2) Phylogenetic analysis showed that NnPIN genes can be divided into two types: classic and non-classical based on the length of the central hydrophilic ring, and the same type has a similar structure; the classic type has complete motifs 1 to 12, but the non-classic type The central hydrophilic ring part (motif 6,8,9,12) is missing. (3) Cis-acting element analysis found that the NnPIN gene has a large number of light-responsive, abiotic stress and hormone-responsive elements in the promoter region, and specifically has anaerobic, abscisic acid (ABA), low temperature and other response elements. (4) The expression pattern of NnPIN genes showed that the NnPIN family genes (except NnPIN8) all respond positively to exogenous ABA and low temperature stress, while NnPIN6 and NnPIN7 positively respond to flooding stress, and NnPIN1, NnPIN2, NnPIN3, NnPIN4, NnPIN5, NnPIN8, NnPIN9 and NnPIN12 respond negatively to flooding stress. The study speculated that NnPIN family genes are specifically involved in lotus abiotic stress.

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程志鹏,汪仲毅,匡健华,等.荷花 PIN 基因家族的鉴定及非生物胁迫表达分析[J].西北植物学报,2024,44(1):1-12

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  • 收稿日期:2023-08-01
  • 最后修改日期:2023-09-25
  • 录用日期:2023-09-27
  • 在线发布日期: 2024-01-02
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