普通丝瓜PYL基因家族鉴定及在果实发育中表达分析
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1.福建农林大学园艺学院;2.福建省农业科学院作物研究所

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S642.4

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国家大宗蔬菜产业体系福州综合试验站项目(CARS-23-G51)


Genome-wide Identification of the PYL Gene Family in Luffa Cylindrica and Analysis of Expression in Fruit Development
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    摘要:

    【目的】为了探究普通丝瓜PYL基因在ABA处理下的表达模式。【方法】利用生物信息学方法,分析PYL基因家族在普通丝瓜全基因组中的分布、染色体定位、基因结构、基因共线性、选择压力分析、进化亲缘关系和顺式作用元件,并通过qRT-PCR验证在不同浓度ABA下表达特异性。【结果】在普通丝瓜全基因组中鉴定到11个LcPYL基因,对应CDS长度576-966 bp,均具有典型PYR_PYL_RCAR_like结构;共线性分析发现7对源自于全基因组复制事件,预测具有相似的生物学功能;普通丝瓜PYL基因启动子含多个与植物激素相关的顺式作用元件,其成员的表达具有一定的组织特异性;普通丝瓜果实在不同浓度外源ABA处理下,2 mg/ml ABA处理LcPYLs表达并无显著变化,4 mg/ml ABA处理LcPYL5、LcPYL7、LcPYL11显著上调表达,8 mg/ml ABA处理LcPYL1、LcPYL7开花当天显著表达。【结论】本研究对普通丝瓜PYL家族成员进行了系统的鉴定与分析,明确其分子结构特征和表达模式,其中LcPYL1、LcPYL5、LcPYL7和LcPYL11可能是与内源ABA生物合成密切相关的关键基因。

    Abstract:

    【Objective】 This study aims to examine the expression pattern of the PYL gene in Luffa cylindrica after ABA treatment. 【Methods】 Bioinformatics methods were used to analyze the distribution, chromosome location, gene structure, gene collinearity, selection pressure analysis, evolutionary relationships, and cis-acting elements of the PYL gene family in the whole genome of Luffa cylindrica cucumis. The expression specificity of the PYL gene family under different concentrations of ABA was then verified by qRT-PCR. 【Results】 Eleven LcPYL genes were identified within the entire genome of Luffa cylindrica. These genes correspond to CDS lengths of 576-966 bp and all possess typical PYR_PYL_RCAR-like structures. Collinearity analysis reveals that 7 pairs derived from genome-wide duplication events are expected to have similar biological functions. The PYL gene promoter in Luffa cylindrica contains several cis-acting elements associated with plant hormones, and the expression of its members shows certain tissue specificity. The expression of LcPYLs in Luffa cylindrica fruit did not exhibit significant changes when treated with 2 mg/ml ABA, However, the expression of LcPYL5, LcPYL7 and LcPYL11 significantly increased after 4 mg/ml ABA treatment, LcPYL1 and LcPYL7 were significantly expressed on the day of flowering post 8 mg/ml ABA treatment. 【Conclusion】 In this investigation, we conducted a systematic identification and analysis of PYL family members within Luffa cylindrica in order to establish their molecular structure and expression patterns. Our findings suggest that LcPYL1, LcPYL5, LcPYL7, and LcPYL11 are potentially crucial genes that are closely linked to endogenous ABA biosynthesis.

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王玉倩,彭丽娟,刘建汀,等.普通丝瓜PYL基因家族鉴定及在果实发育中表达分析 [J].西北植物学报,2024,44(3):408-420

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  • 收稿日期:2023-08-23
  • 最后修改日期:2023-12-07
  • 录用日期:2023-12-08
  • 在线发布日期: 2024-03-07
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