枸杞SWEET基因家族的鉴定与糖含量关系分析
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宁夏农林科学院国家枸杞工程技术研究中心

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宁夏自然科学基金优秀青年基金项目(2023AAC05049);宁夏回族自治区重点研发项目(2022BBF02008)


Identification of SWEET Gene Family and Relationship Analysis of Sugar Content in Wolfberry
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    摘要:

    【目的】糖外排转运蛋白(sugars will eventually be exported transporters, SWEETs)在植物生长发育过程中发挥重要作用,为解析SWEETs基因在枸杞(Lycium barbarum L.)果实发育过程中对糖积累作用,进一步为揭示SWEET基因在枸杞果实发育过程中作用提供参考。【方法】研究基于枸杞基因组数据,采用生物信息学方法对枸杞SWEET基因(LbaSWEET)进行全基因组鉴定,并利用已发表的转录数据分析了LbaSWEETs在果实发育时期的基因表达情况。【结果】结果表明,枸杞SWEET基因家族共有37个成员,随机分布于10条染色体上,分别编码152~621个氨基酸,蛋白质分子量为16.87~69.97 kD,等电点为4.96~9.86。亚细胞定位预测位于叶绿体或质膜,大多数含有7个跨膜螺旋。系统进化分析发现,37个LbaSWEET蛋白可分为4个亚群,每个亚群的基因结构和保守基序组成相似。启动子元件分析发现,LbaSWEET基因启动子富含大量激素响应、逆境胁迫和生长发育响应元件。转录组数据和qRT-PCR分析表明,LbaSWEET9和LbaSWEET29基因表达量随着果实成熟呈现显著增加。相关性分析结果表明,LbaSWEET9和LbaSWEET29基因表达量与果糖含量呈显著正相关。【结论】研究推测LbaSWEET9和LbaSWEET29基因是果糖积累的关键基因。

    Abstract:

    【Objective】 Sugars will eventually be exported transporters (SWEETs) play an important role in the growth and development of plants. The aims of the study were to elucidate the role of SWEETs genes family in sugar accumulation during the development of wolfberry, and provide a reference for revealing the role of SWEET gene in the development of Lycium barbarum L. fruit. 【Methods】 In the present study, based on genomic data of L. barbarum L., the SWEET gene (LbaSWEET) of L. barbarum L.was identified by bioinformatics method, and the expression of LbaSWEET during fruit development was analyzed using published transcriptional data. 【Results】 The results showed that there were 37 members of the SWEET gene family, which were randomly distributed on 10 chromosomes, encoding 152-621 amino acids, respectively. The molecular weight of the protein was 16.87-69.97 kD, and the isoelectric point was 4.96~9.86. Subcellular localization is predicted to be located in the chloroplast or plasma membrane, most containing seven transmembrane helices. Phylogenetic analysis indicated that 37 LbaSWEET proteins could be divided into four subgroups, each of which had similar gene structure and conserved motif composition. The analysis of promoter elements showed that LbaSWEET gene promoter was rich in hormone response, stress response and growth response elements. Transcriptome data and qRT-PCR analysis showed that the expressions of LbaSWEET9 and LbaSWEET29 genes increased significantly with fruit ripening. Pearson correlation analysis showed that the expression levels of LbaSWEET9 and LbaSWEET29 genes were significantly positively correlated with fructose content. 【Conclusion】 It is speculated that LbaSWEET9 and LbaSWEET29 are the key genes that played an important role in the accumulation of fructose sugar.

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尹跃,秦小雅,赵建华,等.枸杞SWEET基因家族的鉴定与糖含量关系分析[J].西北植物学报,2024,44(3):396-407

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  • 收稿日期:2023-08-30
  • 最后修改日期:2023-11-09
  • 录用日期:2023-11-30
  • 在线发布日期: 2024-03-07
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