LEA基因家族鉴定及其对非生物胁迫的响应
CSTR:
作者:
作者单位:

作者简介:

通讯作者:

中图分类号:

基金项目:

国家自然科学基金项目(32160731);江西省教育厅科学技术研究项目(GJJ2201233)


Genome-wide Identification and Abiotic Stress Responses of LEA Gene Family in Poncirus trifoliata
Author:
Affiliation:

Fund Project:

  • 摘要
  • |
  • 图/表
  • |
  • 访问统计
  • |
  • 参考文献
  • |
  • 相似文献
  • |
  • 引证文献
  • |
  • 资源附件
  • |
  • 文章评论
    摘要:

    为明确LEA基因在枳非生物胁迫中的作用,研究通过生物信息学方法对枳LEA基因家族进行全基因组的鉴定,并采用qRT-PCR技术分析其在不同非生物胁迫下的表达情况。结果表明:(1)枳基因组中鉴定得到57个LEA基因家族成员,编码蛋白的氨基酸长度在62~945 aa之间,分子质量在6.95~104.98 kD之间。(2)系统进化分析表明,PtrLEA基因可分为8个亚家族,LEA_1~LEA_6、dehydrin和SMP,LEA_2亚族家族成员最多。(3)顺式作用元件分析表明,PtrLEA启动子上存在大量的植物激素、胁迫响应以及生长发育有关的响应元件。(4)转录组数据分析结果显示,LEA基因家族具有组织表达特异性,PtrLEA15、PtrLEA17、PtrLEA23、PtrLEA51在所有组织中均有高表达,也发现有3个基因在所有组织中不表达。(5)实时荧光定量PCR结果显示:PtrLEA基因在低温、干旱和高盐胁迫处理条件下,与对照相比分别有6、2和6个基因上调表达,推测该基因家族参与多种非生物胁迫应答。

    Abstract:

    In order to clarify the role of LEA gene in abiotic stress, this study identified the whole genome of the LEA gene family by bioinformatics, and analyzed its expression under different abiotic stress by qRT-PCR. The results indicated that: (1) The presence of 57 members of the LEA gene family that encoded proteins with molecular weights ranging between 6.95-104.98 kD and amino acid lengths between 62-945 aa. (2) The phylogenetic analysis classified the PtrLEA genes into eight subfamilies. LEA_2 had the most members, followed by LEA_1-LEA_6, dehydrin, and SMP. (3) Cis-acting element analysis demonstrated that the PtrLEA promoter contained a significant number of hormone, stress response, and growth and development-related response elements. (4) Transcriptome data analysis indicated tissue-specific expression patterns of the LEA gene family, with PtrLEA15, PtrLEA17, PtrLEA23, and PtrLEA51 highly expressed in all tissues, while three genes did not express in any tissues. (5) The real-time fluorescence quantitative PCR test revealed up-regulated PtrLEA gene expression when exposed to low temperature, drought, and high salt stress conditions, with 6, 2, and 6 genes up-regulated, respectively, suggesting the involvement of this gene family in the response to various non-biological stresses.

    参考文献
    相似文献
    引证文献
引用本文

陈 凯,佟晓楠,张晓媛,等.枳LEA基因家族鉴定及其对非生物胁迫的响应[J].西北植物学报,2023,43(6):918-928

复制
分享
相关视频

文章指标
  • 点击次数:
  • 下载次数:
  • HTML阅读次数:
  • 引用次数:
历史
  • 收稿日期:
  • 最后修改日期:
  • 录用日期:
  • 在线发布日期: 2023-07-04
  • 出版日期:
文章二维码