荔枝VQ基因家族鉴定及参与非生物胁迫应答的功能分析
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广东省农业科学院果树研究所 农业农村部南亚热带果树生物学与遗传资源利用重点实验室 广东省热带亚热带果树研究重点实验室

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乡村振兴战略专项资金(农业科技能力提升)项目(2023TS-2-3);茂名市科技计划项目(2022DZXHT058);汕尾市市科技计划项目(2022A003)


Identification and Functional Analysis of VQ Gene Family under Abiotic Stresses in Litchi chinensis
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    摘要:

    【目的】鉴定荔枝(Litchi chinensis)VQ基因家族,并分析其在不同组织的表达模式及在低温、高温、干旱和盐胁迫下的应答。【方法】利用生物信息学方法在荔枝全基因组中鉴定LcVQ基因,并对其理化性质、亚细胞定位、基因结构和保守基序等进行分析;利用MEGA 6.0软件构建系统发育树,分析荔枝、拟南芥和水稻VQ蛋白的系统发育关系;使用实时荧光定量PCR(quantitative real-time PCR,qRT-PCR)技术验证LcVQs对多种非生物胁迫的响应情况。【结果】荔枝中共鉴定获得可聚类为9个亚族的18个VQ基因(LcVQ1-LcVQ18),依次分布在荔枝的11条染色体上,其编码蛋白的氨基酸数介于111~427 aa之间,分子质量为12.48~45.49 kD;除LcVQ15和LcVQ17定位于细胞质之外,其余LcVQ蛋白均定位于细胞核。顺式作用元件预测分析结果表明,LcVQs启动子区域包含大量植物生长发育响应元件、激素响应元件及逆境响应元件。转录组数据分析结果显示,不同组织中LcVQs的表达量具有明显差异,总体上分为普遍性表达和特异性表达。qRT-PCR结果显示,在低温、高温、干旱和盐胁迫处理下的3 h内,与对照相比分别有4,3,3,4个LcVQs明显上调表达,可快速响应相应胁迫。【结论】荔枝全基因组中有18个VQ家族成员,具有典型VQ保守结构域,能差异化响应多种非生物胁迫,为研究其抗逆机制奠定了基础。

    Abstract:

    【Objective】 VQ protein is a kind of plant-specific protein with the conserved VQ motifs (FxxhVQxhTG), which plays an important role in plant growth and development as well as in response to abiotic stresses. To date, the roles of the lychee (Litchi chinensis) VQ gene family has not been systematically studied. We systematically identified the LcVQ gene family members, a sequence characteristic, expression patterns in different tissues of lychee and their responses to abiotic stresses. 【Methods】 The gene sequences of LcVQ genes were obtained from L. chinensis genome using bioinformatics methods, and their physicochemical properties, subcellular localization, gene structure, and conserved motifs were analyzed; a phylogenetic tree were constructed using MEGA 6.0 to analyze the phylogenetic relationships of the VQ proteins in lychee, Arabidopsis and rice; the responses to various abiotic stresses were verified by the quantitative real-time PCR (qRT-PCR). 【Results】 A total of 18 LcVQ genes were identified from the L. chinensis genome, named as LcVQ1-LcVQ18, which were clustered into 9 subgroups. They were widely distributed on 11 of 15 chromosomes of lychee. The amino acid number of LcVQ proteins ranged from 111 aa to 427 aa, and their protein molecular weights from 12.48 kD to 45.49 kD. The predicted results of subcellular localization showed that except for LcVQ15 and LcVQ17 were localized at Cytoplasm, all other LcVQ proteins were localized at Nucleus. The prediction analysis results of cis-acting elements indicate that the LcVQ promoters contained a large number of growth and development, plant hormone and stress-responsiveness related response elements. The analysis results of transcriptome data suggested that LcVQ genes expression varied at different tissues, which can be divided into universal expression and specific expression. Under the treatment of low temperature, high temperature, drought and salt stress, we found that 4, 3, 3 and 4 LcVQ genes were significantly up-regulated at 3 hours of treatment, indicating that these genes can quickly respond to the abiotic stresses. 【Conclusion】 There are 18 VQ family members in the L. chinensis genome, with typical VQ binding domains, which can differentially participate in different stress responses, and laying a foundation for studying its stress-resistant mechanism.

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凡 超,杨 杰,陈 蓉,等.荔枝VQ基因家族鉴定及参与非生物胁迫应答的功能分析[J].西北植物学报,2024,44(5):739-750

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  • 收稿日期:2023-10-10
  • 最后修改日期:2023-12-08
  • 录用日期:2023-12-11
  • 在线发布日期: 2024-03-27
  • 出版日期: 2024-05-25
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