割手密SnRK2基因家族全基因组鉴定及干旱胁迫表达分析
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云南农业大学 农学与生物技术学院

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国家自然科学基金项目(31960451);国家重点研发计划项目(2018YFD1000503);云南省作物生产与智慧农业重点实验室专项(202105AG070007);云南省重大科技专项(202202AE090021)


Genome-wide Identification and Drought Stress Expression Analysis of SnRK2 Gene Family in Saccharum spontaneum L.
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    摘要:

    【目的】蔗糖非酵解相关蛋白激酶2(sucrose non-fermenting 1-related protein kinase 2,SnRK2)在ABA信号转导途径和非生物胁迫响应中发挥重要作用。为进一步解析割手密SnRK2基因家族成员在干旱胁迫中的调控机制。【方法】该研究以全基因组数据为基础从割手密中鉴定SnRK2基因,并对其进行生物信息学分析和干旱胁迫下的表达分析。【结果】结果表明,在割手密基因组中共鉴定出11个SnRK2基因家族成员,命名为SsSnRK2.1-SsSnRK2.11,且这些基因不均匀的分布于8条染色体上。理化性质分析结果表明,SnRK2蛋白编码的氨基酸残基数为227~580,分子量为25 683.53~64 695.8 D,等电点为4.62~8.94,且均为亲水性蛋白。系统发育树可将其分为3个亚组,且同亚组中的保守基序基本相似,外显子数量以7~9个为主。顺式作用元件分析显示,SsSnRK2基因家族成员的启动子中含有多种激素类和逆境胁迫响应类的作用元件。不同组织转录组数据分析表明,割手密SsSnRK2s的表达具有组织特异性。qRT-PCR结果表明,所有的SsSnRK2基因均能不同程度地响应干旱胁迫。【结论】研究认为,SsSnRK2基因可能在割手密的干旱胁迫响应过程中发挥重要作用。

    Abstract:

    【Objective】 Sucrose non-fermenting 1-related protein kinase 2 (SnRK2) plays an important role in ABA signaling transduction and abiotic stress responses. The aims were to further elucidate the regulatory mechanism of SnRK2 gene family members under drought stress in Saccharum spontaneum. 【Methods】 This study identified SnRK2 genes in S. spontaneum based on whole genome data, and conducted bioinformatics analysis and expression analysis under drought stress on them. 【Results】 The results showed that 11 SnRK2 gene family members were identified and named as SsSnRK2.1 to SsSnRK2.11, which were unevenly distributed on 8 chromosomes. The results of physicochemical property analysis showed that the encoded amino acid residues of SsSnRK2s ranged from 227 to 580, the molecular weight ranged from 25 683.53 D to 64 695.8 D, the isoelectric point ranged from 4.62 to 8.94, and all were hydrophilic proteins. The 11 SsSnRK2s could be divided into 3 subgroups, and the conserved motif sequences within the same subgroup were quite similar, with the number of exons mainly ranging from 7 to 9. Cis-acting element analysis showed that the promoters of SsSnRK2 gene family members contained various hormone-related and abiotic stress response cis-acting elements. The analysis of transcriptome data from different tissues showed that SsSnRK2s were expressed in a tissue-specific manner. The qRT-PCR results showed that all SsSnRK2 genes were able to respond to drought stress to varying degrees. 【Conclusion】 The study suggests that the SsSnRK2 genes may play a significant role in the response process to drought stress in S. spontaneum L.

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吕绍芝,钱禛锋,饶席兵,等.割手密SnRK2基因家族全基因组鉴定及干旱胁迫表达分析[J].西北植物学报,2024,44(5):729-738

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  • 收稿日期:2023-10-22
  • 最后修改日期:2023-12-08
  • 录用日期:2023-12-11
  • 在线发布日期: 2024-03-27
  • 出版日期: 2024-05-25
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