花生ASR基因家族特性及其对干旱和盐胁迫的响应
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山西农业大学小麦研究所

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山西省科技重大专项计划揭榜挂帅项目-重大基础前沿与民生公益类(202201140601025-4-04);山西农业大学生物育种工程-高产优质早熟花生新品种选育(YZGC018);山西农业大学“引进人才科研启动工程”项目(2023BQ113)


Genome-Wide Analysis of ASR Gene Family Involved in Salt and Drought Stress Response in Peanut
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    摘要:

    【目的】探究花生ASR基因家族特性及在干旱和盐胁迫响应中的作用,为花生抗旱抗盐新品种的培育提供潜在的基因位点。【方法】通过生物信息学方法对花生ASR家族进行全基因组水平鉴定以及基本特性分析,并借助转录组数据分析其在200 mmol/L NaCl及模拟干旱PEG处理下的表达变化。【结果】(1)通过分析花生栽培种狮头企参考基因组,鉴定到7个花生ASR基因,pI为5.34~6.98,蛋白脂肪系数为23.77~56.84,GRAVY值均为负值,表明这7个蛋白均是亲水性蛋白;(2)AhASR3与AhASR7基因表达模式相似,转录水平较高,基因结构及蛋白结构域和保守基序的位置和数量较相似,motif 5、6、9仅存在于AhASR3与AhASR7蛋白中;(3)AhASR1、AhASR5及AhASR2的启动子区域有干旱诱导MYB转录因子的结合位点,AhASR1、AhASR2及AhASR4的启动子区发现有ABA响应元件;(4)花生盐胁迫处理转录组分析结果显示AhASR2、AhASR3及AhASR7在200 mmol/L NaCl处理后根部出现较明显转录上调;(5)模拟干旱PEG处理转录组数据分析结果显示AhASR1、AhASR3、AhASR4及AhASR7在PEG处理4 h和8 h后,转录水平出现2倍以上上调。【结论】明确花生ASR家族基因和蛋白的基本特性,并鉴定可能参与盐胁迫和干旱胁迫响应的ASR基因,为进一步培育耐盐耐旱花生品种提供重要的目标基因。

    Abstract:

    【Objective】 The aim of this study was to explore the characteristics of peanut ASR gene family and their roles in drought and salt stress responses, and to provide potential gene loci for the breeding of drought and salt-resistant peanut varieties. 【Methods】 The ASR gene family of peanut was identified at the genome level and analyzed in basic characteristics by bioinformatics methods, and the expression changes of ASR gene family under 200 mmol/L NaCl and PEG treatment were analyzed by using transcriptome data. 【Results】 (1) Seven peanut ASR genes were identified by analyzing the reference genome of peanut cultivar Shitouqi, and the theoretical isoelectric point (pI) was between 5.34-6.98. the Aliphatic index was between 23.77-56.84, and the GRAVY value was negative, indicating that these seven proteins were hydrophilic proteins. (2) The expression pattern of AhASR3 and AhASR7 genes was similar, with high transcription level, similar gene structure, protein structure domain and the number of conserved motifs, and motif 5, 6, and 9 were only found in AhASR3 and AhASR7 proteins. (3) The promoter regions of AhASR1, AhASR5 and AhASR2 had drought-induced MYB transcription factor binding sites, and the promoter regions of AhASR1, AhASR2 and AhASR4 had ABA response elements. (4) The result of transcriptome analysis of peanut salt stress treatment showed that AhASR2, AhASR3 and AhASR7 were upregulated in the root after 200 mmol/L NaCl treatment. (5) The result of transcriptome analysis of PEG treatment showed that the transcription levels of AhASR1, AhASR3, AhASR4 and AhASR7 were up-regulated more than twice after PEG treatment for 4 h or 8 h. 【Conclusion】 The basic characteristics of peanut ASR family genes and proteins were preliminarily clarified, and the ASR genes that may be involved in salt and drought stress responses were identified, which provided potential target genes for further breeding salt- and drought-tolerant peanut varieties.

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宁东贤,杨秀丽,程麦凤,等.花生ASR基因家族特性及其对干旱和盐胁迫的响应[J].西北植物学报,2024,44(7):1113-1121

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  • 收稿日期:2024-01-26
  • 最后修改日期:2024-02-23
  • 录用日期:2024-03-01
  • 在线发布日期: 2024-06-21
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