桔梗根系响应元宝枫凋落叶的转录组分析
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北京林业大学

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国家林业和草原局项目(DNA-2021);北京市园林绿化局计划项目(2021-STBHXFC-04-11);榆林市榆阳区林业局项目(2024XHFW049,2024XHFW059)


Transcriptome analysis of the root system of Platycodon grandiflorum in response to the fallen leaves of Acer truncatum
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    摘要:

    【目的】以北京地区元宝枫林和桔梗的林药复合种植模式为背景,探究元宝枫凋落叶浸提液对桔梗根部主要药用活性成分积累的潜在影响。对桔梗根部进行转录组测序,鉴定出差异表达基因及代谢通路,为揭示桔梗根部活性成分合成通路中的分子机制具有重要意义。【方法】利用Illumina对桔梗根部进行转录组测序,评估桔梗根部响应元宝枫化感作用的基因表达变化,深入探究萜类、类黄酮和苯丙烷类次生代谢产物的合成通路。【结果】753个DEGs注释到GO数据库的三大分类中,402个DEGs注释到KEGG数据库的50个代谢通路中。与对照组相比,分别有17个、7个和26个DEGs参与萜类、类黄酮和苯丙烷类化合物的生物合成。【结论】在萜类生物合成途径中,10HGO、CYP71D55、CYP76F14、LUS均呈现上调水平;在类黄酮合成途径中,鉴定到的DEGs整体呈现上调水平;在苯丙烷合成途径中,COMT呈现下调表达,4CL和REF1呈现上调表达,整体的DEGs呈现下调表达。推测萜类和类黄酮物质合成上升,苯丙烷类合成下降。文章获得了桔梗根部的全部转录组信息,并初步预测了桔梗萜类、黄酮类以及苯丙烷类合成可能的调控通路。

    Abstract:

    [Objective] With the background of the forest-medicine compound planting mode of Acer Truncatum forest and Platycodon grandiflorum in Beijing, we explored the potential effects of A. Truncatum fallen leaves extracts on the accumulation of major medicinal active ingredients in the roots of P. grandiflorum. Transcriptome sequencing was performed on the roots of P. grandiflorus to identify differentially expressed genes and metabolic pathways, which is of great significance for revealing the molecular mechanisms in the synthesis pathway of active ingredients in P. grandiflorum roots. [Methods] Using Illumina to perform transcriptome sequencing on the roots of P. grandiflorus, evaluate the gene expression changes and deeply explore the synthesis pathways of terpenoids, flavonoids, and phenylpropanoid secondary metabolites. [Results] 753 DEGs were annotated into the three major classes in GO classification, and 402 DEGs were annotated into the 50 metabolic pathways of the KEGG database. Compared with the control group, there were 17, 7, and 26 DEGs involved in the biosynthesis of terpenoids, flavonoids, and phenylpropanoids, respectively. [Conclusion] In the terpenoid biosynthesis pathway, 10HGO, CYP71D55, CYP76F14, and LUS showed up-regulated; in the flavonoid synthesis pathway, the identified DEGs showed an overall up-regulated; in the phenylpropane synthesis pathway, COMT was down-regulated, 4CL and REF1 were down-regulated, and the DEGs overall were down-regulated expression. It is presumed that the synthesis of terpenoids and flavonoids increased and the synthesis of phenylpropanes decreased. The article obtained the full transcriptomic information of the roots of P. grandiflorum and preliminary predicted the possible regulatory pathways for the synthesis of terpenoids, flavonoids, and phenylpropanoid in P. grandiflorum.[ ][ ]

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冯超群,阮坤非,师劭彤,等.桔梗根系响应元宝枫凋落叶的转录组分析[J].西北植物学报,2024,44(12):1900-1914

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  • 收稿日期:2024-06-14
  • 最后修改日期:2024-08-28
  • 录用日期:2024-08-28
  • 在线发布日期: 2024-10-29
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