Bioinformatics and Expression Analysis of a Chitinase Gene from Phalaenopsis spp.
Author:
Affiliation:

Clc Number:

Fund Project:

  • Article
  • |
  • Figures
  • |
  • Metrics
  • |
  • Reference
  • |
  • Related
  • |
  • Cited by
  • |
  • Materials
  • |
  • Comments
    Abstract:

    Using RT-PCR combined with RACE techniques,we cloned the chitinases gene PhCHT (GenBank accession number:KT992851) from Phalaenopsis.The full length cDNA was 1 210 bp,containing a 5′-UTR of 37 bp,a 3′-UTR of 240 bp,and an opening reading frame of 933 bp encoding 310 amino acids;The deduced protein belonged to glycoside hydrolase family 19 and may have lysozyme activity.The bioinformatics analysis indicated that this protein was predicted to be an extracellular secreted protein with a N-terminal signal peptide and a transmembrane structure;It was highly identified with the chitinase-like protein of Phoenix dactylifera,Elaeis guineensis,Setaria italica,and Arabidopsis thaliana.Phylogenetic analysis showed that PhCHT belongs to a clade with other class Ⅶ chtinase genes from Gossypium hirsutum and Saccharum spp.The PhCHT gene was expressed in vegetative and reproductive organs with a higher expression level in root than others.The expression of PhCHT was decreased by a low temperature of 13 ℃/8 ℃ for 3,6,9 and 15 d,and increased by 4 ℃ treatment for 1,2 and 4 h.Our results suggest that the PhCHT plays a crucial role in responding to the short-term cold stress.These results could provide the foundation for further study the phyletic evolution of chitinase genes and the stress resistance breeding of Phalaenopsis.

    Reference
    Related
    Cited by
Get Citation

YUAN Xiuyun, XU Shenping, SONG Caixia, CUI Bo, WEI Bo. Bioinformatics and Expression Analysis of a Chitinase Gene from Phalaenopsis spp.[J]. Acta Botanica Boreali-Occidentalia Sinica,2016,36(2):241-248

Copy
Share
Article Metrics
  • Abstract:
  • PDF:
  • HTML:
  • Cited by:
History
  • Received:
  • Revised:
  • Adopted:
  • Online: March 29,2016
  • Published:

WeChat

Mobile website